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1.
Photosynth Res ; 140(3): 263-274, 2019 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-30712213

RESUMO

Jacques Breton spent his 39 years of professional life at Saclay, a center of the French Atomic Energy Commission. He studied photosynthesis with various advanced biophysical tools, often developed by himself and his numerous coworkers, obtaining a large number of new information on the structure and the functioning of antenna and of reaction centers of plants and bacteria: excitation migration in the antenna, orientation of molecules, rate of primary reactions, binding of pigments and electron transfer cofactors. Although it is much too short to illustrate his impressive work, we hope that this contribution will help maintaining the souvenir of Jacques Breton as an active and enthusiastic person, full of qualities, devoted to research and to his family as well. We include personal comments from N. E. Geacintov, A. Dobek, W. Leibl, M. Vos and W. W. Parson.


Assuntos
Bactérias/metabolismo , Biofísica/história , Fotossíntese , Complexo de Proteínas do Centro de Reação Fotossintética/história , Plantas/metabolismo , Transferência de Energia , História do Século XX , História do Século XXI , Complexo de Proteínas do Centro de Reação Fotossintética/metabolismo , Pigmentos Biológicos/história
2.
Biochim Biophys Acta ; 1777(10): 1229-48, 2008 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-18671937

RESUMO

FTIR difference spectroscopy provides a unique approach to study directly protonation/deprotonation events of carboxylic acids involved in the photochemical cycle of membrane proteins, such as the bacterial photosynthetic reaction center (RC). In this work, we review the data obtained by light-induced FTIR difference spectroscopy on the first electron transfer to the secondary quinone Q(B) in native RCs and a series of mutant RCs. We first examine the approach of isotope-edited FTIR spectroscopy to investigate the binding site of Q(B). This method provides highly specific IR vibrational fingerprints of the bonding interactions of the carbonyls of Q(B) and Q(B)(-) with the protein. The same isotope-edited IR fingerprints for the carbonyls of neutral Q(B) have been observed for native Rhodobacter sphaeroides RCs and several mutant RCs at the Pro-L209, Ala-M260, or Glu-L212/Asp-L213 sites, for which X-ray crystallography has found the quinone in the proximal position. It is concluded that at room temperature Q(B) occupies a single binding site that fits well the description of the proximal site derived from X-ray crystallography and that the conformational gate limiting the rate of the first electron transfer from Q(A)(-)Q(B) to Q(A)Q(B)(-) cannot be the movement of Q(B) from its distal to proximal site. Possible alternative gating mechanisms are discussed. In a second part, we review the contribution of the various experimental measurements, theoretical calculations, and molecular dynamics simulations which have been actively conducted to propose which amino acid side chains near Q(B) could be proton donors/acceptors. Further, we show how FTIR spectroscopy of mutant RCs has directly allowed several carboxylic acids involved in proton uptake upon first electron transfer to Q(B) to be identified. Owing to the importance of a number of residues for high efficiency of coupled electron transfer reactions, the photoreduction of Q(B) was studied in a series of single mutant RCs at Asp-L213, Asp-L210, Asp-M17, Glu-L212, Glu-H173, as well as combinations of these mutations in double and triple mutant RCs. The same protonation pattern was observed in the 1760-1700 cm(-1) region of the Q(B)(-)/Q(B) spectra of native and several mutant (DN-L213, DN-L210, DN-M17, EQ-H173) RCs. However, it was drastically modified in spectra of mutants lacking Glu at L212. The main conclusion of this work is that in native RCs from Rb. sphaeroides, Glu-L212 is the only carboxylic acid residue that contributes to proton uptake at all pH values (from pH 4 to pH 11) in response to the formation of Q(B)(-). Another important result is that the residues Asp-L213, Asp-L210, Asp-M17, and Glu-H173 are mostly ionized in the Q(B) state at neutral pH and do not significantly change their protonation state upon Q(B)(-) formation. In contrast, interchanging Asp and Glu at L212 and L213 (i.e., in the so-called swap mutant) led to the identification of a novel protonation pattern of carboxylic acids: at least four individual carboxylic acids were affected by Q(B) reduction. The pH dependence of IR carboxylic signals in the swap mutant demonstrates that protonation of Glu-L213 occurred at pH >5 whereas that of Asp-L212 occurred over the entire pH range from 8 to 4. In native RCs from Rhodobacter sphaeroides, a broad positive IR continuum around 2600 cm(-1) in the Q(B)(-)/Q(B) steady-state FTIR spectrum in (1)H(2)O was assigned to delocalized proton(s) in a highly polarizable hydrogen-bonded network. The possible relation of the IR continuum band to the carboxylic acid residues and to bound water molecules involved in the proton transfer pathway was investigated by testing the robustness of this band to different mutations of acids. The presence of the band is not correlated with the localization of the proton on Glu-L212. The largest changes of the IR continuum were observed in single and double mutant RCs where Asp-L213 is not present. It is proposed that the changes observed in the mutant RCs with respect to native RCs reflect the specific role of bound protonated water molecule(s) located in the vicinity of Asp-L213 and undergoing hydrogen-bond changes in the network.


Assuntos
Transporte de Elétrons/fisiologia , Complexo de Proteínas do Centro de Reação Fotossintética/fisiologia , Prótons , Rhodobacter sphaeroides/metabolismo , Espectroscopia de Infravermelho com Transformada de Fourier , Sítios de Ligação , Ácidos Carboxílicos/química , Ácidos Carboxílicos/metabolismo , Estrutura Molecular , Mutagênese Sítio-Dirigida , Oxirredução , Complexo de Proteínas do Centro de Reação Fotossintética/genética , Quinonas/química , Quinonas/metabolismo , Água/química
3.
Biochemistry ; 46(22): 6468-76, 2007 Jun 05.
Artigo em Inglês | MEDLINE | ID: mdl-17497939

RESUMO

In native reaction centers (RCs) from photosynthetic purple bacteria the primary quinone (QA) and the secondary quinone (QB) are interconnected via a specific His-Fe-His bridge. In Rhodobacter sphaeroides RCs the C4=O carbonyl of QA forms a very strong hydrogen bond with the protonated Npi of His M219, and the Ntau of this residue is in turn coordinated to the non-heme iron atom. The second carbonyl of QA is engaged in a much weaker hydrogen bond with the backbone N-H of Ala M260. In previous work, a Trp side chain was introduced by site-directed mutagenesis at the M260 position in the RC of Rb. sphaeroides, resulting in a complex that is completely devoid of QA and therefore nonfunctional. A photochemically competent derivative of the AM260W mutant was isolated that contains a Cys side chain at the M260 position (denoted AM260(W-->C)). In the present work, the interactions between the carbonyl groups of QA and the protein in the AM260(W-->C) suppressor mutant have been characterized by light-induced FTIR difference spectroscopy of the photoreduction of QA. The QA-/QA difference spectrum demonstrates that the strong interaction between the C4=O carbonyl of QA and His M219 is lost in the mutant, and the coupled CO and CC modes of the QA- semiquinone are also strongly perturbed. In parallel, a band assigned to the perturbation of the C5-Ntau mode of His M219 upon QA- formation in the native RC is lacking in the spectrum of the mutant. Furthermore, a positive band between 2900 and 2400 cm-1 that is related to protons fluctuating within a network of highly polarizable hydrogen bonds in the native RC is reduced in amplitude in the mutant. On the other hand, the QB-/QB FTIR difference spectrum is essentially the same as for the native RC. The kinetics of electron transfer from QA- to QB were measured by the flash-induced absorption changes at 780 nm. Compared to native RCs the absorption transients are slowed by a factor of about 2 for both the slow phase (in the hundreds of microseconds range) and fast phase (microseconds to tens of microseconds range) in AM260(W-->C) RCs. We conclude that the unusually strong hydrogen bond between the carbonyl of QA and His M219 in the Rb. sphaeroides RC is not obligatory for efficient electron transfer from QA- to QB.


Assuntos
Histidina/metabolismo , Complexo de Proteínas do Centro de Reação Fotossintética/metabolismo , Quinonas/metabolismo , Rhodobacter sphaeroides/metabolismo , Sítios de Ligação/genética , Cisteína/química , Cisteína/genética , Transporte de Elétrons/genética , Histidina/química , Histidina/genética , Ligação de Hidrogênio , Ferro/metabolismo , Cinética , Luz , Modelos Moleculares , Estrutura Molecular , Mutagênese Sítio-Dirigida , Oxirredução , Complexo de Proteínas do Centro de Reação Fotossintética/genética , Conformação Proteica , Rhodobacter sphaeroides/genética , Espectroscopia de Infravermelho com Transformada de Fourier , Água
4.
Biochemistry ; 46(5): 1176-82, 2007 Feb 06.
Artigo em Inglês | MEDLINE | ID: mdl-17260947

RESUMO

In the photosynthetic reaction center (RC) from the purple bacterium Rhodobacter sphaeroides, proton-coupled electron-transfer reactions occur at the secondary quinone (QB) site. Involved in the proton uptake steps are carboxylic acids, which have characteristic infrared vibrations in the 1770-1700 cm-1 spectral range that are sensitive to 1H/2H isotopic exchange. With respect to the native RC, a novel protonation pattern for carboxylic acids upon QB photoreduction has been identified in the Glu-L212 --> Asp/Asp-L213 --> Glu mutant RC using light-induced FTIR difference spectroscopy (Nabedryk, E., Breton, J., Okamura, M. Y., and Paddock, M. L. (2004) Biochemistry 43, 7236-7243). These carboxylic acids are structurally close and have been implicated in proton transfer to reduced QB. In this work, we extend previous studies by measuring the pH dependence of the QB-/QB FTIR difference spectra of the mutant in 1H2O and 2H2O. Large pH dependent changes were observed in the 1770-1700 cm-1 spectral range between pH 8 and pH 4. The IR fingerprints of the protonating carboxylic acids upon QB- formation were obtained from the calculated double-difference spectra 1H2O minus 2H2O. These IR fingerprints are specific for each pH, indicative of the contribution of different titrating groups. In particular, the 1752 cm-1 signal indicates that Glu-L213 protonates upon QB- formation at pH >or= 5, whereas the 1746 cm-1 signal indicates protonation of Asp-L212 even at pH 4. An unidentified carboxylic acid absorbing at approximately 1765 cm-1 could be the proton donor between pH 8 and 5. The observation that in the swap mutant there are several uniquely behaving carboxylic acids shows that electrostatic interactions occurring between them are sufficiently modified from the native RC to reveal their IR signatures.


Assuntos
Ácidos Carboxílicos/química , Mutação , Complexo de Proteínas do Centro de Reação Fotossintética/química , Quinonas , Rhodobacter sphaeroides/química , Espectroscopia de Infravermelho com Transformada de Fourier , Sequência de Aminoácidos , Ácido Aspártico , Medição da Troca de Deutério , Transporte de Elétrons , Ácido Glutâmico , Concentração de Íons de Hidrogênio , Complexo de Proteínas do Centro de Reação Fotossintética/genética , Prótons
5.
Biochemistry ; 44(44): 14519-27, 2005 Nov 08.
Artigo em Inglês | MEDLINE | ID: mdl-16262252

RESUMO

In the photosynthetic reaction center (RC) from the purple bacterium Rhodobacter sphaeroides, proton-coupled electron-transfer reactions occur at the secondary quinone (Q(B)) site. Several nearby residues are important for both binding and redox chemistry involved in the light-induced conversion from Q(B) to quinol Q(B)H(2). Ser-L223 is one of the functionally important residues located near Q(B). To obtain information on the interaction between Ser-L223 and Q(B) and Q(B)(-), isotope-edited Q(B)(-)/Q(B) FTIR difference spectra were measured in a mutant RC in which Ser-L223 is replaced with Ala and compared to the native RC. The isotope-edited IR fingerprint spectra for the C=O [see text] and C=C [see text] modes of Q(B) (Q(B)(-)) in the mutant are essentially the same as those of the native RC. These findings indicate that highly equivalent interactions of Q(B) and Q(B)(-) with the protein occur in both native and mutant RCs. The simplest explanation of these results is that Ser-L223 is not hydrogen bonded to Q(B) or Q(B)(-) but presumably forms a hydrogen bond to a nearby acid group, preferentially Asp-L213. The rotation of the Ser OH proton from Asp-L213 to Q(B)(-) is expected to be an important step in the proton transfer to the reduced quinone. In addition, the reduced quinone remains firmly bound, indicating that other distinct hydrogen bonds are more important for stabilizing Q(B)(-). Implications on the design features of the Q(B) binding site are discussed.


Assuntos
Complexo de Proteínas do Centro de Reação Fotossintética , Quinonas/química , Rhodobacter sphaeroides/química , Substituição de Aminoácidos , Sítios de Ligação , Transporte de Elétrons , Ligação de Hidrogênio , Luz , Mutagênese Sítio-Dirigida , Oxirredução , Complexo de Proteínas do Centro de Reação Fotossintética/química , Complexo de Proteínas do Centro de Reação Fotossintética/genética , Complexo de Proteínas do Centro de Reação Fotossintética/metabolismo , Conformação Proteica , Prótons , Espectroscopia de Infravermelho com Transformada de Fourier
6.
Biochim Biophys Acta ; 1710(1): 34-46, 2005 Nov 15.
Artigo em Inglês | MEDLINE | ID: mdl-16181607

RESUMO

All of the membrane-embedded cofactors of the purple bacterial reaction centre have well-defined functional or structural roles, with the exception of the bacteriopheophytin (H(B)) located approximately half-way across the membrane on the so-called inactive- or B-branch of cofactors. Sequence alignments indicate that this bacteriochlorin cofactor is a conserved feature of purple bacterial reaction centres, and a pheophytin is also found at this position in the Photosystem-II reaction centre. Possible structural or functional consequences of replacing the H(B) bacteriopheophytin by bacteriochlorophyll were investigated in the Rhodobacter sphaeroides reaction centre through mutagenesis of residue Leu L185 to His (LL185H). Results from absorbance spectroscopy indicated that the LL185H mutant assembled with a bacteriochlorophyll at the H(B) position, but this did not affect the capacity of the reaction centre to support photosynthetic growth, or change the kinetics of charge separation along the A-branch of cofactors. It was also found that mutation of residue Ala M149 to Trp (AM149W) caused the reaction centre to assemble without an H(B) bacteriochlorin, demonstrating that this cofactor is not required for correct assembly of the reaction centre. The absence of a cofactor at this position did not affect the capacity of the reaction centre to support photosynthetic growth, or the kinetics of A-branch electron transfer. A combination of X-ray crystallography and FTIR difference spectroscopy confirmed that the H(B) cofactor was absent in the AM149W mutant, and that this had not produced any significant disturbance of the adjacent ubiquinol reductase (Q(B)) site. The data are discussed with respect to possible functional roles of the H(B) bacteriopheophytin, and we conclude that the reason(s) for conservation of a bacteriopheophytin cofactor at this position in purple bacterial reaction centres are likely to be different from those underlying conservation of a pheophytin at the analogous position in Photosystem-II.


Assuntos
Feofitinas/química , Feofitinas/metabolismo , Complexo de Proteínas do Centro de Reação Fotossintética/química , Complexo de Proteínas do Centro de Reação Fotossintética/metabolismo , Rhodobacter sphaeroides/química , Rhodobacter sphaeroides/metabolismo , Clorofila , Cor , Cristalografia por Raios X , Modelos Moleculares , Conformação Molecular , Mutação/genética , Fenótipo , Feofitinas/genética , Complexo de Proteínas do Centro de Reação Fotossintética/genética , Rhodobacter sphaeroides/genética , Análise Espectral , Temperatura
7.
Biochim Biophys Acta ; 1656(2-3): 127-38, 2004 Jun 07.
Artigo em Inglês | MEDLINE | ID: mdl-15178474

RESUMO

In Rhodobacter sphaeroides reaction centers (RCs) containing the mutation Ala M260 to Trp (AM260W), transmembrane electron transfer along the full-length of the A-branch of cofactors is prevented by the loss of the Q(A) ubiquinone, but it is possible to generate the radical pair P(+)H(A)(-) by A-branch electron transfer or the radical pair P(+)Q(B)(-) by B-branch electron transfer. In the present study, FTIR spectroscopy was used to provide direct evidence for the complete absence of the Q(A) ubiquinone in mutant RCs with the AM260W mutation. Light-induced FTIR difference spectroscopy of isolated RCs was also used to probe the neutral Q(B) and the semiquinone Q(B)(-) states in two B-branch active mutants, a double AM260W-LM214H mutant, denoted WH, and a quadruple mutant, denoted WAAH, in which the AM260W, LM214H, and EL212A-DL213A mutations were combined. The data were compared to those obtained with wild-type (Wt) RCs and the double EL212A-DL213A (denoted AA) mutant which exhibit the usual A-branch electron transfer to Q(B). The Q(B)(-)/Q(B) spectrum of the WH mutant is very close to that of Wt RCs indicating similar bonding interactions of Q(B) and Q(B)(-) with the protein in both RCs. The Q(B)(-)/Q(B) spectra of the AA and WAAH mutants are also closely related to one another, but are very different to that of the Wt complex. Isotope-edited IR fingerprint spectra were obtained for the AA and WAAH mutants reconstituted with site-specific (13)C-labeled ubiquinone. Whilst perturbations of the interactions of the semiquinone Q(B)(-) with the protein are observed in the AA and WAAH mutants, the FTIR data show that the bonding interaction of neutral Q(B) in these two mutants are essentially the same as those for Wt RCs. Therefore, it is concluded that Q(B) occupies the same binding position proximal to the non-heme iron prior to reduction by either A-branch or B-branch electron transfer.


Assuntos
Complexo de Proteínas do Centro de Reação Fotossintética/química , Complexo de Proteínas do Centro de Reação Fotossintética/metabolismo , Rhodobacter sphaeroides/genética , Rhodobacter sphaeroides/metabolismo , Ubiquinona/metabolismo , Substituição de Aminoácidos , Sítios de Ligação/genética , Isótopos de Carbono/metabolismo , Transporte de Elétrons , Modelos Moleculares , Estrutura Molecular , Mutagênese Sítio-Dirigida , Mutação , Fotoquímica , Complexo de Proteínas do Centro de Reação Fotossintética/genética , Rhodobacter sphaeroides/química , Espectroscopia de Infravermelho com Transformada de Fourier , Triptofano/metabolismo , Ubiquinona/química
8.
Biochemistry ; 43(23): 7236-43, 2004 Jun 15.
Artigo em Inglês | MEDLINE | ID: mdl-15182169

RESUMO

In the reaction center from the photosynthetic purple bacterium Rhodobacter sphaeroides, light energy is rapidly converted to chemical energy through coupled electron-proton transfer to a buried quinone molecule Q(B). Involved in the proton uptake steps are carboxylic acids, which have characteristic infrared vibrations that are observable using light-induced Fourier transform infrared (FTIR) difference spectroscopy. Upon formation, Q(B)(-) induces protonation of Glu-L212, located within 5 A of Q(B), resulting in a IR signal at 1728 cm(-1). However, no other IR signal is observed within the classic absorption range of protonated carboxylic acids (1770-1700 cm(-1)). In particular, no signal for Asp-L213 is found despite its juxtaposition to Q(B) and importance for proton uptake on the second electron-transfer step. In an attempt to uncover the reason behind this lack of signal, the microscopic electrostatic environment in the vicinity of Q(B) was modified by interchanging Asp and Glu at the L213 and L212 positions. The Q(B)(-)/Q(B) FTIR spectrum of the Asp-L212/Glu-L213 swap mutant in the 1770-1700 cm(-1) range shows several distinct new signals, which are sensitive to (1)H/(2)H isotopic exchange, indicating that the reduction of Q(B) results in the change of the protonation state of several carboxylic acids. The new bands at 1752 and 1747 cm(-1) were assigned to an increase of protonation in response to Q(B) reduction of Glu-L213 and Asp-L212, respectively, based on the effect of replacing them with their amine analogues. Since other carboxylic acid signals were observed, it is concluded that the swap mutations at L212 and L213 affect a cluster of carboxylic acids larger than the L212/L213 acid pair. Implications for the native reaction center are discussed.


Assuntos
Substituição de Aminoácidos/genética , Ácido Aspártico/genética , Benzoquinonas/metabolismo , Ácidos Carboxílicos/metabolismo , Ácido Glutâmico/genética , Complexo de Proteínas do Centro de Reação Fotossintética/metabolismo , Rhodobacter sphaeroides/metabolismo , Ácido Aspártico/metabolismo , Benzoquinonas/química , Ácido Glutâmico/metabolismo , Luz , Estrutura Molecular , Mutação/genética , Complexo de Proteínas do Centro de Reação Fotossintética/genética , Estrutura Terciária de Proteína , Prótons , Rhodobacter sphaeroides/genética , Espectroscopia de Infravermelho com Transformada de Fourier
9.
Biochemistry ; 43(16): 4755-63, 2004 Apr 27.
Artigo em Inglês | MEDLINE | ID: mdl-15096044

RESUMO

In Rhodobacter sphaeroides reaction centers containing the mutation Ala M260 to Trp (AM260W), transmembrane electron transfer along the A-branch of cofactors is prevented by the loss of the QA ubiquinone. Reaction centers that contain this AM260W mutation are proposed to photoaccumulate the P(+)QB- radical pair following transmembrane electron transfer along the B-branch of cofactors (Wakeham, M. C., Goodwin, M. G., McKibbin, C., and Jones, M. R. (2003) Photoaccumulation of the P(+)QB- radical pair state in purple bacterial reaction centers that lack the QA ubiquinone. FEBS Lett. 540, 234-240). The yield of the P(+)QB- state appears to depend upon which additional mutations are present. In the present paper, Fourier transform infrared (FTIR) difference spectroscopy was used to demonstrate that photooxidation of the reaction center's primary donor in QA-deficient reaction centers results in formation of a semiquinone at the QB site by B-branch electron transfer. Reduction of QB by the B-branch pathway still occurs at 100 K, with a yield of approximately 10% relative to that at room temperature, in contrast to the QA- to QB reaction in the wild-type reaction center, which is not active at cryogenic temperatures. These FTIR results suggest that the conformational changes that "gate" the QA- to QB reaction do not necessarily have the same influence on QB reduction when the electron donor is the HB anion, at least in a minority of reaction centers.


Assuntos
Benzoquinonas/química , Complexo de Proteínas do Centro de Reação Fotossintética/química , Rhodobacter sphaeroides/química , Alanina/genética , Antibacterianos/química , Benzoquinonas/antagonistas & inibidores , Benzoquinonas/metabolismo , Sítios de Ligação/genética , Transporte de Elétrons/genética , Congelamento , Luz , Mutagênese Sítio-Dirigida , Oxirredução , Complexo de Proteínas do Centro de Reação Fotossintética/antagonistas & inibidores , Complexo de Proteínas do Centro de Reação Fotossintética/genética , Polienos/química , Rhodobacter sphaeroides/genética , Espectroscopia de Infravermelho com Transformada de Fourier , Triptofano/genética , Ubiquinona/genética , Ubiquinona/metabolismo
10.
Biochemistry ; 42(19): 5819-27, 2003 May 20.
Artigo em Inglês | MEDLINE | ID: mdl-12741840

RESUMO

The effect of substituting Pro-L209 with Tyr, Phe, Glu, and Thr in photosynthetic reaction centers (RCs) from Rhodobacter sphaeroides was investigated by monitoring the light-induced FTIR absorption changes associated with the photoreduction of the secondary quinone Q(B). Pro-L209 is close to a chain of ordered water molecules connecting Q(B) to the bulk phase. In wild-type RCs, two distinct main Q(B) binding sites (distal and proximal to the non-heme iron) have been described in the literature. The X-ray structures of the mutant RCs Pro-L209 --> Tyr, Pro-L209 --> Phe, and Pro-L209 --> Glu have revealed that Q(B) occupies a proximal, intermediate, and distal position, respectively [Kuglstatter, A., Ermler, U., Michel, H., Baciou, L., and Fritzsch, G. (2001) Biochemistry 40, 4253-4260]. FTIR absorption changes associated with the reduction of Q(B) in Pro-L209 --> Phe RCs reconstituted with (13)C-labeled ubiquinone show a highly specific IR fingerprint for the C=O and C=C modes of Q(B) upon selective labeling at C(1) or C(4). This IR fingerprint is similar to those of wild-type RCs and the Pro-L209 --> Tyr mutant [Breton, J., Boullais, C., Mioskowski, C., Sebban, P., Baciou, L., and Nabedryk, E. (2002) Biochemistry 41, 12921-12927], demonstrating that equivalent interactions occur between neutral Q(B) and the protein in wild-type and mutant RCs. It is concluded that in all RCs, neutral Q(B) in its functional state occupies a unique binding site which is favored to be the proximal site. This result contrasts with the multiple Q(B) binding sites found in crystal structures. With respect to wild-type RCs, the largest FTIR spectral changes upon Q(B)(-) formation are observed for the Phe-L209 and Tyr-L209 mutants which undergo similar protein structural changes and perturbations of the semiquinone modes. Smaller changes are observed for the Glu-L209 mutant, while the vibrational properties of the Thr-L209 mutant are essentially the same as those for native RCs.


Assuntos
Complexo de Proteínas do Centro de Reação Fotossintética/química , Complexo de Proteínas do Centro de Reação Fotossintética/metabolismo , Quinonas/metabolismo , Substituição de Aminoácidos , Sítios de Ligação/genética , Modelos Moleculares , Estrutura Molecular , Mutagênese Sítio-Dirigida , Complexo de Proteínas do Centro de Reação Fotossintética/genética , Complexo de Proteínas do Centro de Reação Fotossintética/efeitos da radiação , Quinonas/química , Rhodobacter sphaeroides/genética , Rhodobacter sphaeroides/metabolismo , Rhodobacter sphaeroides/efeitos da radiação , Espectroscopia de Infravermelho com Transformada de Fourier
11.
FEBS Lett ; 537(1-3): 161-5, 2003 Feb 27.
Artigo em Inglês | MEDLINE | ID: mdl-12606050

RESUMO

The photoreduction of the quinone (Q) pool in the photosynthetic membrane of the purple bacterium Rhodobacter sphaeroides was investigated by steady-state and time-resolved Fourier transform infrared difference spectroscopy. The results are consistent with the existence of a homogeneous Q pool inside the chromatophore membrane, with a size of around 20 Q molecules per reaction center. IR marker bands for the quinone/quinol (Q/QH(2)) redox couple were recognized. QH(2) bands are identified at 1491, 1470, 1433 and 1388-1375 cm(-1). The 1491 cm(-1) band, which is sensitive to (1)H/(2)H exchange, is assigned to a C-C ring mode coupled to a C-OH mode. A feature at approximately 1743/1720 cm(-1) is tentatively related to a perturbation of the carbonyl modes of phospholipid head groups induced by QH(2) formation. Complex conformational changes of the protein in the amide I and II spectral ranges are also apparent during reduction and reoxidation of the Q pool.


Assuntos
Hidroquinonas/metabolismo , Complexo de Proteínas do Centro de Reação Fotossintética/metabolismo , Quinonas/metabolismo , Rhodobacter sphaeroides/metabolismo , Cromatóforos Bacterianos/metabolismo , Membrana Celular/metabolismo , Membranas Intracelulares/metabolismo , Cinética , Oxirredução , Complexo de Proteínas do Centro de Reação Fotossintética/química , Espectroscopia de Infravermelho com Transformada de Fourier
12.
Biochemistry ; 41(43): 12921-7, 2002 Oct 29.
Artigo em Inglês | MEDLINE | ID: mdl-12390017

RESUMO

In the various X-ray structures of native reaction centers (RCs) from the photosynthetic bacterium Rhodobacter sphaeroides, two distinct main binding sites (distal and proximal) for the secondary quinone Q(B) have been described in the literature. The movement of Q(B) from its distal to proximal position has been proposed to account for the conformational gate limiting the rate of the first electron transfer from the primary quinone Q(A-) to Q(B). Recently, Q(B) was found to bind in the proximal binding site in the dark-adapted crystals of a mutant RC where Pro-L209 was changed to Tyr [Kuglstatter, A., Ermler, U., Michel, H., Baciou, L., and Fritzsch, G. (2001) Biochemistry 40, 4253-4260]. To test the structural and functional implications of the distal and proximal sites, a comparison of the FTIR vibrational properties of Q(B) in native RCs and in the Pro-L209 --> Tyr mutant was performed. Light-induced FTIR absorption changes associated with the reduction of Q(B) in Pro-L209 --> Tyr RCs reconstituted with 13C-labeled ubiquinone (Q3) at the 1 or 4 position show a highly specific IR fingerprint for the C=O and C=C modes of Q(B) upon selective labeling at C1 or C4. This IR fingerprint is very similar to that of native RCs, demonstrating that equivalent interactions occur between neutral Q(B) and the protein in native and mutant RCs. Consequently, Q(B) occupies the same binding site in all RCs. Since the FTIR data fit the description of Q(B) bonding interactions in the proximal site, it is therefore concluded that neutral Q(B) also binds to the proximal site in native functional RCs. The implication of these new results for the conformational gate of the first electron transfer to Q(B) is outlined.


Assuntos
Mutagênese Sítio-Dirigida , Complexo de Proteínas do Centro de Reação Fotossintética/química , Complexo de Proteínas do Centro de Reação Fotossintética/genética , Quinonas/química , Rhodobacter sphaeroides/química , Rhodobacter sphaeroides/genética , Substituição de Aminoácidos/genética , Sítios de Ligação/genética , Isótopos de Carbono/metabolismo , Cristalografia por Raios X , Fotólise , Complexo de Proteínas do Centro de Reação Fotossintética/metabolismo , Prolina/genética , Rhodobacter sphaeroides/metabolismo , Rodopseudomonas/química , Espectroscopia de Infravermelho com Transformada de Fourier/métodos , Tirosina/genética , Ubiquinona/química , Ubiquinona/metabolismo
13.
Biochim Biophys Acta ; 1554(1-2): 75-93, 2002 Apr 22.
Artigo em Inglês | MEDLINE | ID: mdl-12034473

RESUMO

A series of mutations have been introduced at residue 168 of the L-subunit of the reaction centre from Rhodobacter sphaeroides. In the wild-type reaction centre, residue His L168 donates a strong hydrogen bond to the acetyl carbonyl group of one of the pair of bacteriochlorophylls (BChl) that constitutes the primary donor of electrons. Mutation of His L168 to Phe or Leu causes a large decrease in the mid-point redox potential of the primary electron donor, consistent with removal of this strong hydrogen bond. Mutations to Lys, Asp and Arg cause smaller decreases in redox potential, indicative of the presence of weak hydrogen bond and/or an electrostatic effect of the polar residue. A spectroscopic analysis of the mutant complexes suggests that replacement of the wild-type His residue causes a decrease in the strength of the coupling between the two primary donor bacteriochlorophylls. The X-ray crystal structure of the mutant in which His L168 has been replaced by Phe (HL168F) was determined to a resolution of 2.5 A, and the structural model of the HL168F mutant was compared with that of the wild-type complex. The mutation causes a shift in the position of the primary donor bacteriochlorophyll that is adjacent to residue L168, and also affects the conformation of the acetyl carbonyl group of this bacteriochlorophyll. This conformational change constitutes an approximately 27 degrees through-plane rotation, rather than the large into-plane rotation that has been widely discussed in the context of the HL168F mutation. The possible structural basis of the altered spectroscopic properties of the HL168F mutant reaction centre is discussed, as is the relevance of the X-ray crystal structure of the HL168F mutant to the possible structures of the remaining mutant complexes.


Assuntos
Bacterioclorofilas/química , Complexo de Proteínas do Centro de Reação Fotossintética/química , Rhodobacter sphaeroides/química , Cristalografia por Raios X , Eletroquímica , Complexos de Proteínas Captadores de Luz , Modelos Moleculares , Mutação , Complexo de Proteínas do Centro de Reação Fotossintética/genética , Conformação Proteica , Espectrofotometria Atômica , Espectroscopia de Infravermelho com Transformada de Fourier
14.
Biochim Biophys Acta ; 1553(3): 320-30, 2002 Feb 15.
Artigo em Inglês | MEDLINE | ID: mdl-11997141

RESUMO

Rapid-scan Fourier transform infrared (FTIR) difference spectroscopy was used to investigate the electron transfer reaction Q(A-)Q(B)-->Q(A)Q(B-) (k(AB)(1)) in mutant reaction centers of Rhodobacter sphaeroides, where Asp-L210 and/or Asp-M17 have been replaced with Asn. Mutation of both residues decreases drastically k(AB)(1)), attributed to slow proton transfer to Glu-L212, which becomes rate limiting for electron transfer to Q(B) [M.L. Paddock et al., Biochemistry 40 (2001) 6893]. In the double mutant, the FTIR difference spectrum recorded during the time window 4-29 ms following a flash showed peaks at 1670 (-), 1601 (-) and 1467 (+) cm(-1), characteristic of Q(A) reduction. The time evolution of the spectra shows reoxidation of Q(A-) and concomitant reduction of Q(B) with a kinetics of about 40 ms. In native reaction centers and in both single mutants, formation of Q(B-) occurs much faster than in the double mutant. Within the time resolution of the technique, protonation of Glu-L212, as characterized by an absorption increase at 1728 cm(-1) [E. Nabedryk et al., Biochemistry 34 (1995) 14722], was found to proceed with the same kinetics as reduction of Q(B) in all samples. These rapid-scan FTIR results support the model of proton uptake being rate limiting for the first electron transfer from Q(A-) to Q(B) and the identification of Glu-L212 as the main proton acceptor in the state Q(A)Q(B-).


Assuntos
Complexo de Proteínas do Centro de Reação Fotossintética/química , Rhodobacter sphaeroides/química , Benzoquinonas/química , Transporte de Elétrons , Hidroquinonas/química , Modelos Moleculares , Mutagênese Sítio-Dirigida , Complexo de Proteínas do Centro de Reação Fotossintética/genética , Prótons , Rhodobacter sphaeroides/genética , Espectroscopia de Infravermelho com Transformada de Fourier/métodos
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